NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10358177

Scaffold Ga0211729_10358177


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10358177 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6962
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001805Metagenome / Metatranscriptome631Y
F008616Metagenome / Metatranscriptome330Y
F008811Metagenome / Metatranscriptome327N
F012447Metagenome280Y
F023328Metagenome210N
F028786Metagenome / Metatranscriptome190N
F030061Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0211729_1035817710F001805GAGMATTNKIFVGIDDQVIELTGEDKEAFIADRQATADAQALLETEYKAKQKAREDAIKKLAEIAGLTEEEINAIL
Ga0211729_1035817711F028786AGAAGMRSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPN
Ga0211729_103581773F030061AGTAGGMALSTLRASLKSAITDNTKYSAYDHVPEIIIPPCALILASDPYLEPIVIGNTKNWYVRLTLEVVSTTYSNPSALTNLEDDIETILALIPTNWVILSVSSPRIRQTNNTDLLCSEIQLQTAYTG
Ga0211729_103581774F008811AGGAMATTILSGRQLTLSVNGNSYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGATPNSLYKVLWDGTESAPDTTIAFIMTLRTGVTLTGLVLPQYPSVTATGADVQTCSVSLQVVGIPTEDLTA
Ga0211729_103581775F008616AGGMLKLKLTWELETGEKFEEWTRPIELSLAEKELYASKSIVKILIDESTPSNTLLLFLAHKIQQRVTKKVENFETWKSKVTDIAASDFETANFTKPEVSGEQQ
Ga0211729_103581776F012447GAGMAKTVQLVKVDKDYRGLLRAFSKMDDIAKNDMKQIASALAERGANYAKGAASNAPYNVRQAQAVADSIKISKSDKAPSFSIGGNRKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYEKIRDAWVAGL
Ga0211729_103581778F023328N/AMTVYTPTYRVTIAGVVQTSTTLQDGTITYGRNDFFEATQPSYCNIELLNLDGTSPVVELLDTVLIEVTDSTGAYIKLFTGEVSGVYNRFEGAGLSGKPNTLQIQAIGALGLLVKRYAGGVAYPEELDGARIQRILEETLFVAWEDLSNTQTWNDFTTETWANYGVQGIDTIDAGRYEMLARSAQVQQAYELTDITQQSGLGYLYDTADFEIGYADAERRSENYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVVAQNDTSINTYGLLEEIRSTILAETADATEQATNFVNYRGTPKASLEEITVNLAHSDMTNTVRDNLLGVSMDTLLYLDNVPVGLLPEGYFEGFVEGWTWTLGRKNLELAMSVSNSIYSTLDVQWEDYNSAIQWQNLDNATRWLDVI
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