NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10515087

Scaffold Ga0211729_10515087


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10515087 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1748
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F012016Metagenome284Y
F050979Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_105150874F012016AGGTGGMQETLKDELPRQPDGWWTREFNANNDLVFSAFTQFRPTEISWVRDLPNKKHYLIIAPFYVNEAQAEKITGVKSYKESTKRLMEAYNGL
Ga0211729_105150875F006587GGAGGMDSKKYDGTGFVLVGLIVGCCITWGIMKYNNTQTKYKMNLKCIQCELYEEVRTNMFVKSHLECFEQRSF
Ga0211729_105150876F050979AGGAGMATQQIHKSKRHANPFKTKTGKDRLKALTLKVLYEMLDKVKEAGKKRAKIAKEIARRTPV
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