NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10544190

Scaffold Ga0211729_10544190


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10544190 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1087
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053078Metagenome141N
F078653Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0211729_105441901F053078N/AIVIHRLNQMDDGGVPAWTGEFATYLDFAAHATFAETEERKVHDGTAAEQATLLRVTIQRYKYPMHSALHTLKCCRAKQGEPKPHEIGVALIATRGSLTASQEWLMRKYPLMLHREIWLEAAERTLHLLHERYTETPRAIVRSKSDSQLNAEVNDAQASNQA
Ga0211729_105441902F078653GAGGMPKHPTKPDKYAALEAYVAACLPALNLANWKVGILPDVAPEDRYADIEPNDQAQTANLRVGNLFWAQKPQEQRLTIVHELIHLHLCRLDQTVDRLEPVLGSAAWAPWAAVYEDVYERATDAIAEVLAPQVDLPNL
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