NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10608132

Scaffold Ga0211729_10608132


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10608132 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2232
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053831Metagenome / Metatranscriptome140N
F063331Metagenome / Metatranscriptome129Y
F074804Metagenome / Metatranscriptome119Y
F088345Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0211729_106081321F074804N/ARSRIMIDSRLSDQRDEFFLDIAKGDLVFLQADDGSEISGIAVERSFVGWMLKGGQEVIEDENYLGHVSFGQLTGVAA
Ga0211729_106081326F088345GAGMYRKYYRVKKMDELEKFFLPPDIQSWIMRYDAGSEQALVKQVPLTEDNITMIDRLAGMMTITRRYRGPRHNSRNFTRDCPKKDAERVSVYLRERVA
Ga0211729_106081327F053831GAGGMSNWQKLNYSGDKVKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWIDKTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIEEAVSVARHNLKQMADAMAERVTA
Ga0211729_106081328F063331GAGMTDIDNFTLLNDLKELLRQLDLGDTEQVRSELQDIIDRVQADCDERHRIYLERVERYMGHVDSALSTKGDK
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