NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10621887

Scaffold Ga0211729_10621887


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10621887 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5829
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002421Metagenome / Metatranscriptome560N
F033005Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_106218871F033005N/AMTRKLTEHDTQIYKQARAELLRDSPICHWCKKNTATELDHLVESDKGGTIEDGYVASCKPCNSARGATYRNKKLANAKQNREKALNDFLYSDLMPPNPMLLFVANDQN
Ga0211729_106218874F002421AGGAGMKTCTICKETIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTRPQQNEVDAAIVHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNSAARRGIIRNTGELAFAQRGGAHDHAQRLSVWAGI
Ga0211729_106218878F001872N/AVAIAKAKEGVANARDYIGNADGASPAPRAGMNEFIKQVTAHSNGAFVNLGSWGQRDVKGKPGTLSVHATGRAWDAGYTTSEKHPNASRKNALPFIDQMIANANDLGIQMVIDYFPKEFGRAWRCDRQAWKNYDTKTVSGAPGGRWFHIEISPQAADSVIWVKAAFLKVFGEIPPKA
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