NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10763079

Scaffold Ga0211729_10763079


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10763079 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4207
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012017Metagenome / Metatranscriptome284N
F022191Metagenome215N

Sequences

Protein IDFamilyRBSSequence
Ga0211729_107630792F022191GGGGGMAKGVKTDGKHGKATYSPQRLINSVAMATLDGRGLGLKKHPSLGDVTVDDRRVLQRIVGITVEEFNQRLIGKLDTLADKIVDRMLETVDDTPLQTLGFNLAVAIDKRQRIAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKTGVPTIQSAPVDIGNCNDIDAKISKKTGAVKD
Ga0211729_107630794F012017N/AMILFINTAGIRNANNNKCCEFLASKPRQSLQVYCMATKRILIGTPLKGDIPKSYFRTSLVMASAKIPDVKLDWILLDGPAVQIARNEIAAYAIENNFDEVIFWDKDVLAQRNGVDVTDSALMRLIGHDKDIVTSVYASRSLDTHWHVTPLPDEVANEEGLQKVERASIGFSKIKVGVFKAIAYDNPDRVAMLFDPNRAPRSIPELFPMELQGRNIPSYRLQQIKNALTECKNDDKLRMRIERELSVRYDEPNAYLSEDYGFCKLARESGYDIWMDTLMVLGHESRVTLPIETPKLMEMLSEPWRKEELAVIKTQLIKQNQEAKEKNNNNRN
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