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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020172 Open in IMG/M |
| Scaffold ID | Ga0211729_11112789 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 66173 |
| Total Scaffold Genes | 75 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (21.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009684 | Metagenome | 314 | Y |
| F019105 | Metagenome | 231 | Y |
| F030696 | Metagenome | 184 | Y |
| F035632 | Metagenome / Metatranscriptome | 171 | Y |
| F070887 | Metagenome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211729_1111278931 | F009684 | N/A | MNIYKLTYENKDTALADLKAKGILVEVDGIDGEKHEAYGNGVQAVVEIGLILVTPPVMDGMDIVTPPVYADGYHYDVMSSELYDFGANLVEPKNPKHAFAGHAITEEFPYEPMVQIEE |
| Ga0211729_1111278939 | F019105 | N/A | MKRKLIIVGSLFIVLVVTQVFSSGHGHVVVVEDNIQLTGENKKLTTANKKLTNSVNELKADKENLQDMVSEVIGDLDSTKSVVKDIKKELDNEKDIVRSQSTGKQFEFQPITLPTSDGN |
| Ga0211729_1111278940 | F070887 | N/A | LSFSQSRYPLQTVIDGDSVVILTKAQADTINAIFENQKARIARFKSDVKTKDSIISVRDTVLMFYSQQVVQYRNVIDLQIVREDKLDTIRQWLQKRAIEGAWIYYSYINNEIVAVDLSDYVVRKDDYTGDIMFYKRTEDCPDDNKQKEPPVGWHYDVVKPKRPKLNIFKL |
| Ga0211729_1111278947 | F030696 | N/A | MKRIALVFIVLLSLFATSCSVNYHLTKATKKGYRCDTVSDTIQITSIDSVPVIVHDSIVWEKYFVTKDTVIQYKTSFVPKTRFQTRIEYKLKRDTIRQIQKIEVAKYKSQKKGNANLWLFIIGFSLGFLTRWLLKFSKYNL |
| Ga0211729_1111278949 | F035632 | N/A | MEKFLSIPVTNEQRQLVSATGIVLIEQESTTTLHIHYKASTASDVVVITHATAPAGDESMRDAIQDAIVKALTTSWTNVAYEVANLPFAVSGITIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |