NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_11260493

Scaffold Ga0211729_11260493


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_11260493 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87539
Total Scaffold Genes116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (13.79%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018370Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_11260493106F018370N/AMIHILWCTLRPAQFMSAHTEWIKRADNPEQIQTYVAVNWKEQADELREYLSKNYLITLNTNKIGVCYPSYQLSSNLGIKMGKCEDSDIVVFASDDFMAPQGWDTYLLNKLEGKGDVGLMVRDGYQLPDSSNMLHAAITIPIMTYGCLRKMNGIIYHPAYNHMFSDCELYNNLKDLGLLYDDRMNDETIFEHLHYAAGKRQPDQADQAYNAKWAEDDITWQKRQSMAVEERIEI
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