NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181556_1026830

Scaffold Ga0181556_1026830


Overview

Basic Information
Taxon OID3300020176 Open in IMG/M
Scaffold IDGa0181556_1026830 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3339
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003377Metagenome / Metatranscriptome490Y
F048668Metagenome148Y
F060645Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0181556_10268302F048668N/AMRYFRSTPAVYATICQQLDEAYGYPNAETKTLRTLPLASELPSDAQGRVYLAVSDEYCEYVLPSQLLPKLLASGAVEAVTQAQYKALMPQIP
Ga0181556_10268304F003377GAGMTDAAKDTMLSVLRDYGFSVVVALACGWVLRQDVLLPLVEEHRAFVKQLSETQREISQAITEQTRLLYALQPREKAYTTSVTTPEPGRN
Ga0181556_10268306F060645GGGGGMRFLVAIVIVMAGCVATLPGDGGITADLAAETARMVVRMRAEIAPTPAPPSDGKCQNCDGLGYVGDGRIKITCTACGGTGREPKSVLVRPCPDGKCKP
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