NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10001070

Scaffold Ga0194134_10001070


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10001070 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38660
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (60.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004740Metagenome425Y
F014606Metagenome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000107025F004740N/AMGNDNPFEGLDLATLATLKSETLAAIRAVLVNSSYSINGKSVTRADLARLNVMLGQIVAAIDYQNGTSADVTFVSFNGN
Ga0194134_1000107042F014606GGAMSTRTQIRNAIGAKLTAGAAVVPTANLLKGRNNTIASVSFPSAAVYAVDEQIEVRSLAPSNRVQYRQLTVNVDYFTAQTGVTFIDDLFDTGSAAVEAAVLEDVTLGGVCDDLHLTNVQYVIEEDEDKRWGVARHTFNCIYLTTD
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