Scaffold Ga0194134

Basic Information
Taxon OID	3300020179 Open in IMG/M
Scaffold ID	Ga0194134_10001542 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020179 Open in IMG/M

Scaffold ID

Ga0194134_10001542 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29955
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (25.53%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29955

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (25.53%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-4.8915	Long. (^o)	29.586	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Tanzania: Lake Tanganyika

Coordinates

Lat. (^o)

-4.8915

Long. (^o)

29.586

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F034147	Metagenome / Metatranscriptome	175	Y
F088879	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194134_1000154212	F005529	AGG	MAKALPKSKTDYSLEIRYRLRDGQWSEWSNKGKGLFESIEIVQRQIRTLASAYQGREKEVRFEWNGWLCDFQGKPTGQVIELK
Ga0194134_1000154228	F088879	N/A	MREIATDIRVSVLNAITPLVVSATTIPVRDTFMPPSVTIPDFQTGKAYVLLTDQNEAETTNNDCSIRQSVNFNINIITKFPVGSGGKKASELISNAIQLKMTEDYLILPGDLQLINIRKSFSRVQIEQGTTEIAYQKILGYTLDIFQVS
Ga0194134_1000154230	F034147	N/A	MAKYHSAPYKEAEIFFYPNLGALANFEDFTGQGISEAFSGNSIPRLDLIYALLIECHKVACIRKSINPISLEELKIWVEGPDVMKLFNEVLADLLLELGLGETQEKKI
Ga0194134_1000154243	F001775	GAGG	MRKLLDDERIRIAIVSFLLGIILTFVIYPKPEFETVYKTKIDRLTDTLYITSSDTVYIPKTKIKTQVVRDTILINFKPKISRFETTFPFDYGSTKVSGEVLGEVLKMTATNDYKLPVVTNTITETKTETIVVKPKGIYLGGGVNSLLQPSASASYVDDKYIFQYQFQPLQKVHQIGVSKKIF
Ga0194134_1000154244	F008081	N/A	MDESEILNPFNYGRASKLIDENRKPDDWWLDYLADHLPLIENEFYILFLDGLLVKKGRSKFKSSQYIRGEKFYSFKKFYQNIFFEGI
Ga0194134_100015426	F008073	N/A	MKETIVKHLKKMEFVCGLKQFKEYKEEEALELINCLNDLFKKYGWMTDERVDYILQAGMRGQYGDFYHVNEKTVNTWINQYYQHHQSQIVMEIQNLHNKDREQSPEEIAHWNEIGKQTFKENYQHAKETGTCRHLAEWGIYWFNRFQEKGILKPWLFNVEEIEQDVRKELRLTSRYVEESTVGAKTKNKIWKLFILQSISNNAKLDELI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194134_10001542

Overview

Ecosystem & Geography

Associated Families

Sequences