NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10002328

Scaffold Ga0194134_10002328


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10002328 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22777
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (87.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022863Metagenome212N
F025724Metagenome / Metatranscriptome200N
F056546Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000232810F022863AGGMCKIDDEFFITTSGKIFFKGQVYELDDCEFLAGSKVVIHYSEKRIEKLLKKDGKIKLIPDQFIYQKEEDMFLYPIEDQMLIAQAGAPSPAQTHSLVELPPEIDQFQELMKITKDNTPLALIILVVLMFQKMQKKEREDKDHALVCDFERQEIEKKINVLESKIDAQARDQIKILLDDQDLADRLDRVEEKIKKINQS
Ga0194134_1000232814F025724GGAGMTKSKTTVKKDIVDSKPSKNKEIAKVSSEEKANIAKQKRLAVMEKVLEFISQGLSQTDALSFVGVSYSSWNTWMKNHPELVTDIKRAEISLKVRHLQNIQRHSENDVRASQWLLARKFPAEFGEKATIDMNTKSDDSKVIINVIQQVQKEKHPQVVQVTHDLPEEFEDEED
Ga0194134_1000232815F056546GAGMKIKDRKSILNLYVSTKLIGLLDAFSDRHSIKVSKLAEKLMLDGLNKSDLDQVLAIDDDDAIEKITTKIIRELDNDKE
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