NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10009170

Scaffold Ga0194134_10009170


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10009170 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8104
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022640Metagenome / Metatranscriptome213Y
F027828Metagenome / Metatranscriptome193Y
F091925Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000917010F022640N/AMRIAFLIATLALGLRVGLAAHASVNEYQEQQADRFCQINPNYCK
Ga0194134_100091705F091925N/AMTSISFTSGELLDIISALEEKENVLYDADDKHLAAYYMNLGNQFQRVYDKLQDFVPENRVANLVLIAN
Ga0194134_100091707F027828GGAMTTQTLLDKVLMTEELLNEKQLTALRDMLYVYKDLQKEVHNYPPEDTLFTKTQFEIFNIFDIK
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