NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10023900

Scaffold Ga0194134_10023900


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10023900 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3926
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001150Metagenome764N
F003213Metagenome500Y
F011486Metagenome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_100239002F001150N/AMLTKHEKSRIAVAIAASQASANARWTAQQRADVDAAIRKMARMQPRFTADEVWHELGPAFPVTKGMTARLAHAQRQGIIKNTGMIKIANRGGVHDHAQRLTIWQSL
Ga0194134_100239006F011486N/AVTRPYTINKQPVVTSAKAGMAKWVNLCCRHSDGSLWNNGVWVVRDMRGKPGVVSNHARGLAVDLSYRWQAQQKRGRQDGRKVSLAYVNKLLDNADTLGIQLVIDYALNRSWKCDRGTWIGGKFDPGDWWHIEVDPRLANDPQAAKQAFQAVFGVSPTRPTQPV
Ga0194134_100239007F003213N/AMGGGMTAKKINKKNRQIGDQTTKGGLIGLFIYFATTNNVDPALIALLVPIISSVLAWISTKIGDPDLACLFIPKDKK
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