NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10036156

Scaffold Ga0194134_10036156


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10036156 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2913
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015719Metagenome / Metatranscriptome252Y
F056346Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0194134_100361561F015719N/AKVMRYTHPENQEPTVSVEVDGNNYTFTTQSLIDTIKKDEEYRAEIAQLERKLLSLKYDVKEFFQARYEADETEIVCEVDDVNELLKDIGTDELAKSWSATVVITTTVTGIEASNADAAREMLEDAFDVNLTIDGDVWVDNISVDSCYPEA
Ga0194134_100361563F056346AGGAGMSSTEAPISVNLKTAGGTLITLRGETPEKFADMIAQGIHTVVDAVTEVELAVKGTSATKPMSVADIASSFNANISSTQPGTEETVEDKWGNTWVYNKAGAPSCERGVMVLKHGKAQATGKPYKAFYDPAAGPKWTGPRIPVEERSKTIYV
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