NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163155_10304496

Scaffold Ga0163155_10304496


Overview

Basic Information
Taxon OID3300020180 Open in IMG/M
Scaffold IDGa0163155_10304496 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.SP4.G1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003290Metagenome / Metatranscriptome495Y
F013485Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0163155_103044961F013485N/ASIITRAGDVRNSLTIKFGATSSSEVSALDSPSISTFGTLAQIITTTLANSSDATAQAAFYLALRAQPFAIFNEITFDLTNPELDDADRDALLGVFMGQPIALSNLPLNMNAGTFQGFVEGWSFRASYNQLSITLFVTPLAYSLQAMRWNDVPVTETWASVIPTLEWQYATLVA
Ga0163155_103044962F003290AGGAMANPTTNYGWQMPTPTDLVTDLPADFEVFGQAVDTALIDLKGGTTGQVLSKTTGTDMDFTWVTNNPGDI
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