NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206129_10039932

Scaffold Ga0206129_10039932


Overview

Basic Information
Taxon OID3300020182 Open in IMG/M
Scaffold IDGa0206129_10039932 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3139
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053312Metagenome / Metatranscriptome141N
F095519Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0206129_100399325F095519GGAMKINECCLKDIKAREAKLQEVAESRAGLVGAAILLILYGIASNMEYYDCVNLGVC
Ga0206129_100399326F053312GGGGGMSYKVLNDAVGLIRDETPMWEGSYQELPDKTKDGLIALWLITHPTWMDDVFPHTVSDKPLLALEAIYSEDATSRMAAAMFRDAADRNAKDVDNDAYLSEALDDFEAILDTPDFLEEIRHQLYMYLEPSMEELVMDSFQDLNHLDRLVMGSH
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