NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206129_10071459

Scaffold Ga0206129_10071459


Overview

Basic Information
Taxon OID3300020182 Open in IMG/M
Scaffold IDGa0206129_10071459 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1988
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009856Metagenome / Metatranscriptome312Y
F015079Metagenome257Y
F048232Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0206129_100714595F015079N/AMVQAQIESIQGKGDWKGKHGTMYTFEVAFNDGTVGEANAKSQEPPYKVGDEAYYEIKTDDQFGKKLKISKNPPPPGGFQQFQPAKQDPDKDKKMIRGMCFKVAGMAWANQYKHKSFELPHEVMVKDVISLAKKYEKAYNEWMEE
Ga0206129_100714596F048232GGAMSKIVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKHKLRLEIARVQKALKELDPDGMFPP
Ga0206129_100714597F009856N/AMKYWFEVEDAQRWGLPAAAVLAHLKYWIARNTEAGEEPCMTQSIARMQGHLPFLTFDQIRRALSKLEKADAIYRKSNGFDRRHTYCLAELPQASGEIATTKRQDCHIEEAELPRVHIETNTSKRTRENARKELEYERPTEEEVVEYFRDIGGSDVADQLGQEFHTHYESTGWIVSGTPMAKWK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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