NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10000245

Scaffold Ga0194115_10000245


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10000245 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84735
Total Scaffold Genes156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)105 (67.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F007305Metagenome / Metatranscriptome353Y
F009680Metagenome / Metatranscriptome314Y
F086677Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_10000245143F000325GGAGMKTADGNDKLGKGCVVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANIVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDVEYVANVTWACESILADGDSLPDMWFYTHIYDSRLVSLDKYMAVYASVHDDNDMGEALAQGFKLFAWCDSDEKIAPKRPRSKKKADAWRASLPKLVVLNATKFVVCPEIRRGRATITCTGTKDSISCDLCVRGLANVLFPAH
Ga0194115_1000024522F009680GGAGMSETIIHFWENIATTSIGIIVTMIGFWVTIGRNMATKTEVAHMIETQSPYNQDRQFIMERLATNKETQAAFASALQRNTEVMTELKIQIATLGKTLEALEERIDK
Ga0194115_1000024571F086677N/AMLNYQIDYSDWSNEGGYCQVYPIVGYCGLVFKEFRNKKKATRSYTYHKKLEKFDLAPKIHSKVCRLKFADDGDMVFDDPSDWGYIIEKATIDRAATKISMKQIQKLVNDINEKTGLKFWDCHWYNVGLVKRGRTKKLVCIDTGEESFDGLSNAWGNPDPGPKCSYCKRYECKCEED
Ga0194115_1000024594F007305N/AMICFTQNNPIKTNAKAHRIGEQFNLAKYIEYPFVHAESHLISNLLDSYNTIDPNWNIVVLRINRKGLILGSKPCENCNKLLNAVGLNSCYHSNDDGSFTRL
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