NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10007895

Scaffold Ga0194115_10007895


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10007895 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10436
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F078427Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1000789510F078427GGAMVKSKGGILKESLVAQISAYVYYNVQVISKLTTNAAFKNKFREVIFNQLEKDFGEYVDSQARVKPKTLHHVYEWNQVGNPELRLFKLNKLNTEGLGFSISYEFLPSKTFTSTEGNRRHVFVSKASVMEAGMPLKIAPRHSKRLVFESNGYKVFMPEGASVVVKRPGGVGVKNSFMMTYSRFFKSNLVNASIKKSGFQKLFNSSMTKALRVPADIRTVKYTFNPNTIAVQADAALTSAFGASL
Ga0194115_1000789511F000258GGAGMTVNYKLDAMLELRKYIWTKLQAAEIFNPDDYYSDNIGETLVPIIPVQQIPDMNQFLSGKDHIVYDKIGVSYDTLWLICNEQILFTVYSTDVSKINEVRNFMIDEFRRMDESAKDVNLSANFNSEKFKFHSIYVADMSPTEPSEELQGFYSADVILEIKYSRNTNSSGRYI
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