NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10014304

Scaffold Ga0194115_10014304


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10014304 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6814
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021068Metagenome / Metatranscriptome220Y
F034858Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100143044F034858AGGMSAAFISMISPQIKFCISTCKAFAPHTIPVAIGSMIRWGIKAEEILIVNGGWETNATSSYKGVEMLLVKQNSFEYTPLIEIVERELWSDYWFLLHDTCTVGERFNSLVRALPVERPEKVAMKGTPSMSIGLYSMSYLMRHKDRLTAIKNFDLSREGLQAWKQWGVPNEDYMLWKLGDVPTHVYHPELHGPDEWNYQGHADFYDTGHPRRVEYFPQLDLYKAKSNWQGVQPTLCIDI
Ga0194115_100143047F021068GAGMSCGPRGMFMQPSDCTIYAVCINDEKVRYEAKSTIVPILGGAWAIDNEKRDALRKEGYVFDDEGGYMSALNERWGELSCVQWMMLNAEKKNIGNAQYRRNWIEPNNEWYADDTLYVPEPAVFACSLEQQFYGGHRDFDAPAITRELADSDQWVFSREEIDAVWAQNLFIGCNMARGPKREYKEFMTVLFHALIPIWEKHKDHFLSIEGYDRRAIAFIAERIITGLVLHRDRVLPNVKIATAPIGFIN
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