NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10015601

Scaffold Ga0194115_10015601


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10015601 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6378
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014593Metagenome / Metatranscriptome261Y
F020142Metagenome / Metatranscriptome225Y
F026002Metagenome199N
F034178Metagenome / Metatranscriptome175Y
F036229Metagenome170Y
F056434Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1001560114F014593N/AMDPKKDFKKFFQKMFDTPVDIQGEVLTPEERTRKNFITFVDNYKKAVLRSQEVQEKFGLDLWNWEDLFAKSLEGLIYYTFDEEVAEVILWYIYEHSLAEDQEDKIVNFGDDQFIIETAEDLYDLICLVEE
Ga0194115_1001560115F036229N/AMTIYCYYYVKNDPSQEKLGKILTGSRLEAAKEFAGQKQLPLKTFLSIWSVGKKKVF
Ga0194115_1001560116F026002N/AMEQKFKLEFPLDLEIKYDDPEELLELASKEEFVTFMFRNAIAAIKQAIRKNKSECVIFSIQNYNVRVAIKKEHYKTFLNKAIKHYEALEEYSKCSELVNLKSRL
Ga0194115_100156012F034178N/AMKEGDKVTSTQYPDRVFELVWYKEGDNTCGVQDEALRAVVKVSSLSLVTQE
Ga0194115_100156013F020142N/AMRRSPKRIEIPGKKWNEKFVHEKKTWHVVHKQDGITYAVCELRPGVVGGLVKRFYI
Ga0194115_100156017F056434N/AMSKVSAKARYEAFSEWHKWAQFHYKSMKKKKKARPDYMLSNEDY
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