NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10016675

Scaffold Ga0194115_10016675


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10016675 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6065
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F003267Metagenome / Metatranscriptome496N
F006621Metagenome / Metatranscriptome368Y
F057194Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100166751F006621N/ATCFGVARQPLAGAGTNYENLANSTKKSNQEEQIQARTESLMMVISTLCDCITAVDESNAPNAYAVKMKIVDKIDQLIDKIEY
Ga0194115_1001667512F057194N/AMAISVLSGSPQAATPVYNKMLFKVSGSLTSATNYRYVCDVKNAAGTTTLARLKCDKLPTTNFGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLVFMEEFGTTPVVQ
Ga0194115_100166758F003267N/AMKLIHYYHIYCGGGGQWQLILNQHMMALCNYGLIEQLDEIRVGIVGPPDQRKAVKEILEGSLIAPKVKVVVTRTNAYEQATLTEMYRASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERAVAELENVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRKLGEPMREQRWQAEHWIGKAEGMTVYNACKGWPAPDKFIITF
Ga0194115_100166759F000557N/AMKLQDLTIDQFQRIAALEFSPALNDADKRVGVVAIVEGVGVAIVRDMPAKSLTKRYKAIVKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMDMNTTDERQLVQNLHRIMATLCREAGWFGWFPKKYDGSAHADRAELLKTHAKVGDVWGVVSFFLLSSESYLKVLSDYSAHLTKMAKAL
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