NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194115_10094545

Scaffold Ga0194115_10094545


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10094545 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1689
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017469Metagenome / Metatranscriptome240Y
F024719Metagenome / Metatranscriptome204Y
F069714Metagenome123N
F077230Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100945451F077230AGGAGGMKKWVRNGLILMVTLVLLSLGHNHLFTPPVGRIPDGVIENRKATKVEKDRNK
Ga0194115_100945452F024719GGAGMSEVIQLPRRGKRVVVFYEVSDPQGIAVWGGESPQEALNWYRRSPAGSKIWVSQYEADEENANLVLDSIEITPIVLATITDSIDRWSK
Ga0194115_100945455F017469AGGMSICQFCGWEIEKADWYNQYNGAIACDNCLMDYATEREKERV
Ga0194115_100945456F069714AGGAGGMNINIKESYMPEYTKVITFECEGEEYLAEVYVGKHCSDYNLYQGNKKLEDKPAWLEKAELDPEFSFLFFIDELAWEYEAGNSWQVKV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.