NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10000800

Scaffold Ga0206131_10000800


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10000800 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42299
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005287Metagenome / Metatranscriptome406Y
F024089Metagenome / Metatranscriptome207Y
F034890Metagenome / Metatranscriptome173Y
F044418Metagenome / Metatranscriptome154N
F048843Metagenome / Metatranscriptome147Y
F067627Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000080010F044418N/AMSHEQRMIDYAQKWYKENDLETEKKNGNDLYLRVNDNVFTEVSHCDIRQKAMLWLESELEGVNNY
Ga0206131_1000080014F067627N/AMINTLLKVLSKQQFGFVTKEDLDSLEVEMPNLPLLIRCGCDRYIAQAQDTKARMDYVEETGDYVRDVSIPSRTLDGMSTSPFVPFAVKQAIESMRVF
Ga0206131_1000080050F048843AGAAGMEQKDKYFVFSVPTAYIYEIQAKTEKEAREILVEEGGLSIFGEQCTMTSEDYAQADLEQTYEM
Ga0206131_1000080069F024089N/AMNKLEEAMGNLNNIQSNIDAVIHAIGDSPKQYTEDELLNMLMGMSQIHQTWYDNLWMEYENHRRANNLFDKDDIFDQNYMEIKQGE
Ga0206131_1000080092F034890N/AMIQIEDSNNEKYHINPKQVVYVKERLHLNKLLFKILLVNGEVIMTSNEHGAKCIIASIKSKKA
Ga0206131_1000080095F005287N/AMKINSSDIIYSEHGEDECFEYKVDGGRVPEGEAVGFLINYGKDFVLFNDIKYSEHDHTYWDNYELENDVNRIVLP
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