NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10000816

Scaffold Ga0206131_10000816


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10000816 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42000
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (24.19%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019909Metagenome / Metatranscriptome227Y
F020259Metagenome225N
F024582Metagenome / Metatranscriptome205Y
F026537Metagenome / Metatranscriptome197N
F036969Metagenome / Metatranscriptome169N
F068220Metagenome / Metatranscriptome125Y
F092864Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000081642F036969N/AMFSTHAIRLAYGKTLMDGGSSLLTSDGYDFEVPYKGFMVGGLSGETKIPLDICDSTTFHSIWHKYSAEVRKLIKDNPSSSYAVGTWVDKGCIVFDVSEKLTDSRSAYDLCKERNEDAYYDVEASKSVFIEKDNDNAEA
Ga0206131_1000081645F024582N/AMKCTHNTLTHLLGAWDRLEVVGTNPDNYKSILTNTLLPHRNEFGKRQVKIAIEYRIEEGGARNAPYIYAFLVMYDQNGHRRSVIKNGSWGCHGEDMMEFKLWFAKKLNHANEMQEQRIENAQESITDFLS
Ga0206131_1000081647F020259N/AMINLKMTEQTFTAVADWAERIQMMTQENRLINSQDIVHDVFGMLRDDEHFLPRL
Ga0206131_1000081648F019909N/AMTNFEQHIGHELPQEWIDYINAHTTDELYNQAKKLKFDSWCPILLENDSPELRKHLEEASELLFKYVDHIDSQLVTK
Ga0206131_1000081649F068220N/AMLPNQNLNLMKLYASIHGVCGLAEGYSETTVQFFKTLEQAKEHKARVLALLTKAEHEEVITHTDGTQDIIVYDDLNSEQEILKIVEVNPLWDTDHFNPANSSTREWLMWNQMESEAMYDGEYLPTDMGCIKEATDILYGTNESMLMEPWADFVGGIYYRGEAMLDADDVCIYFFRVPKSDTL
Ga0206131_1000081650F026537N/AMNKKYHMKQEIIDRLEYVEETYAGEMETWRDPVTEAYYHVPIEIVRDWDNSELLESNKQSKMTHKRKEQHIKQLAFSINHGASGYVTDNFVIEDLPTPQRTGTMTQQDTYSKHKARQIFEAFLEQNPNIND
Ga0206131_1000081657F092864AGGMTNEQAIQIVLKNKDPSNAERLAAMYACDDILEMDIDVWLSKDVSEYLPQFPDIAESLVEDLLKEDSISVERVANSLTEVSRSMYHYVRFYEILSSYDMALSER
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