NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10001240

Scaffold Ga0206131_10001240


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10001240 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33217
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (65.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F005495Metagenome / Metatranscriptome399Y
F007417Metagenome351Y
F008595Metagenome / Metatranscriptome331Y
F036651Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000124011F036651AGGAMDIHLNEVGTTKPLILPKRSIRGYYKDFLTGEIKVQVNDKEYSVRDSLTEIQYLMGVNT
Ga0206131_100012403F008595AGGAGMSKEENKMENQEPVIITFNNVEYRASDLNEEQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINATNEEVEVVEEE
Ga0206131_1000124036F005495N/AMLKWNGGSNTPNLNMKKFLIIKDTVANGQKVNAGDIIELREDVGHELCAYGKASVHIEKPKANKEDRSVGLKTSKVKAPKTRAKK
Ga0206131_1000124037F001582GAGMAIESAADFTSYLDINTGHGVTATFFEVQQSLWDDFPLIDTLFDIDSGFSKNINIIIDQEYFNIEAGTVPVAGYQPRAIVKASDVPYISQEDKLLINAITTNRGSVLKPATTFIVKTVEPDNTGFVELVLEEE
Ga0206131_1000124038F002716AGAAGMSQYRLETEEDMASYLDPNSHGVAATYINNGTSTDINIILNNEYVEQEEGIGVEALEPIAYCRSIDIPSVAYGHLLNVSAIKDTDGNIIKAATNYTIVNIRPDRTGFIALELEEV
Ga0206131_100012409F007417AGGAGMRYTLQVQLPSLGWVVAMKTSDLFYMASKRARLIAEGHKVKLTKESK
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Institute for Fundamental Biomedical Research
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