NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206131_10001418

Scaffold Ga0206131_10001418


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10001418 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30921
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (87.50%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015169Metagenome / Metatranscriptome257Y
F025991Metagenome / Metatranscriptome199Y
F028500Metagenome / Metatranscriptome191Y
F028789Metagenome / Metatranscriptome190Y
F036682Metagenome / Metatranscriptome169N
F037203Metagenome168Y
F048178Metagenome / Metatranscriptome148N
F063653Metagenome / Metatranscriptome129N
F088515Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000141816F063653AGAAGMLTIPDICDKLKRLDEVTILELLEINSEEIVNRFQDKIEDMADYLEEALDDN
Ga0206131_1000141818F015169GGAGMEDKQYYHFKKKCSRPSVETSSEHFYVCNEDARWDDVMRQFAAFLDSCGYVGVYEKVDIMLEDYWDTGLDTGGFRA
Ga0206131_1000141828F036682GAGGMTDKITKDGVACIDLNYYWRPIEEAPHGVKLQLLSMYGVASHGSLSPAIIEDGFWIGWTPLPRRRK
Ga0206131_1000141829F028789AGGAGGLTETIGTSKVTLIRENEDGSADYQCNFSPEELDALVRLGILTTLQAAIEDAKRLNPEEDDDRQDN
Ga0206131_100014183F048178AGAAGMRHTVGKVIQPDTLTELFKVPAGYKAEVSTLFVSNRQGNNKTVSVYWQHAHDITHKIYIITEYVLTANNYVQFSDSMVMQSGDSLQVLTEAGSLMNVMASFDLRKEQAVLAFDGE
Ga0206131_1000141833F025991GGAGMRCNCCNVILSPFESTTRKVSTNDFIDICEKCLSTIDEDVKVLTREDLRSEVGTDVANYIDCFDLTKDNDE
Ga0206131_1000141834F028500GAGGMMYEIQTKWSHMVVYRTTERGNALYWLEENNQEGIFVLVKVKKV
Ga0206131_1000141838F088515AGGMIDQAQHHINEATRLIKRAIMTDTLLGNDQAQYVAFLDLWESLYSLDRLIKNWDEDEDAVKQNLLSEEG
Ga0206131_1000141841F037203AGGGGGMQNRFETLQEALDAEEIAHMWDCSPINYNETRTLTYADGSRYGHYISIYRDERGLYERPIHYSRN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.