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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020185 Open in IMG/M |
| Scaffold ID | Ga0206131_10001879 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26316 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (60.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008684 | Metagenome | 329 | Y |
| F012834 | Metagenome | 277 | Y |
| F015946 | Metagenome | 251 | Y |
| F027349 | Metagenome | 195 | N |
| F043684 | Metagenome | 156 | N |
| F047023 | Metagenome | 150 | N |
| F048298 | Metagenome | 148 | Y |
| F084262 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206131_1000187913 | F047023 | N/A | MNNIKFTNEVLNKIYSELAIGNGIKTILKDLNLSWEGFRKLCHKKPKVRQEYELAKQDGVDYLLSESQTELKNMIEDFKANGKGDLATSHLLKEAVALTKWKASKLLPKYNDNAQKISLANADGQPLVVKWSKD |
| Ga0206131_1000187917 | F015946 | AGG | MTKYKIVDWMNNRIFPDKIFKSFEHGWEYIYSKFDNNEDHQEYYVVDVNQKERVSNDY |
| Ga0206131_1000187918 | F008684 | AGG | MIINNDNFDMACQLADDIYFKFIDSLDNKKASEFVVPDKDNIGSTKNTEKGSELYWDIENTIKNTLDNRKV |
| Ga0206131_1000187919 | F084262 | AGG | MYIIDYPNQRIKKFSNNELEDFLNTIVKKRWIFIKDKNKAKKFINQVSLNRKGNK |
| Ga0206131_1000187920 | F048298 | GAG | MNKQFLFWREVNKRVREECTIEAKDLDEATKLHNEGYCDYVEVDTLDEDEILDEGTTESEVK |
| Ga0206131_1000187922 | F027349 | GAGG | MKVWNIRVTDRNGFDSYSFFQEDEPTNQQLEVIKNIYQNSGRYIPEDIEDIDVEIKGSFDNQNIPTYDQLIDNLKNKYEVKK |
| Ga0206131_1000187927 | F043684 | N/A | MTIESVELKWEEIFSGAFTGLLRQSESMRNNIKWGHGAKFSIYEEWGRSISGTICEMALSKKMQSYFSHSVNNYFGKDLIINNKPVQVRSQLHSKQNKSLIIRKPFNHEDYYFLVGDDTPKYYFYGYILARDVSLVGNWTNFNNDNRPYVWSVPFDKLKPIDQFQYEK |
| Ga0206131_1000187928 | F012834 | N/A | MNSERFTDTAWTTGNFNKATISPSQTALNNWTYFLKYQLIPHLKFKPEKPSISFKTGTFVHEWFQNILMGNAKIEDVEKHFKTHIEQFKFSEKHRMKSLFLLKNIKGYVQRHLDAIKEISTWGEGWGIEKPFSDWYDNKYLGQTLNIANEGFIDCYNDDLEIITEHKNRFGSAKLSPLKKEPKKNVKPNENRIGDWTYTKSQKINKPQFTHCIQVAVYSKHYNYKYQPYLIYVGDSDYTIFTKDNCWELSNSGLEYFFEKFIQINIQRQEMLRIANGDIRKLAIMIGVDWSEIRNYKNNFLLENYHEEDMYKLETFYEQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |