NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10002815

Scaffold Ga0206131_10002815


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10002815 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20589
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (20.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005287Metagenome / Metatranscriptome406Y
F025258Metagenome / Metatranscriptome202Y
F035765Metagenome171Y
F102786Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000281517F025258N/AMSEYKPKPFTKELAEQMKVAMSEPFDEKRTLCNVLKLAYRCSREESYNLQAVQALLLESLWMGQRMHAKLYKDQQNELKHQSPTQNEDEDPFAVDWSNLDGRNVAKGNWD
Ga0206131_1000281523F102786N/AMLKGKERQIVLDCLYQESLAKAKKHTIFEVKAKMTAKLEAQLRYEHLSPRERIQIYNNFICKKITKYIADDISKSATMYWVNGTPEKRNQRIAEYARYAFTRMPENQKIAICEKLGFKYLSN
Ga0206131_1000281528F005287N/AMVHELESGRRIIKIKSTDIVYSEHDYDECFEYKDGSGRVADGAAIGYEQNEQLILFKDIIYSQYDHQYWDNHELENDVDRIVIG
Ga0206131_1000281535F035765GGAMINGLIKDVLSYFQSASWTDQDEALKQQIFADIIEPNKCWYCGVGEMRDMDHFIPTNGRLFKPPMFGLEHDGNKIPSCKTCNANKSNKHPLEWLQRGRVTKGKEFVFPAERIAAFQIFFDTFQHKLVADQDLTDIIINQAIPKCEASTQQLADFENWIEI
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