Basic Information | |
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Taxon OID | 3300020185 Open in IMG/M |
Scaffold ID | Ga0206131_10003107 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19374 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (18.42%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026881 | Metagenome / Metatranscriptome | 196 | Y |
F046384 | Metagenome | 151 | Y |
F056147 | Metagenome | 138 | N |
F101156 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0206131_1000310713 | F101156 | N/A | MKKEVTIEYDNIALVVVGEYEKGQDGSYMYPDFSSDFNCFKVLCGGQDIIDILEQEVIDELENQAIEIIEEKW |
Ga0206131_1000310714 | F026881 | GGA | MKNKKYTTKERFKILEATVATLYVAIEKLSKRIDVIDNFLTKATKDFKEE |
Ga0206131_1000310722 | F046384 | N/A | MKNEPIHETVRDLYTFKNMQIDALQKEVAIKNKKILQLETFIFELCDKNCPELYKKIVIKELLNDTTRD |
Ga0206131_1000310726 | F056147 | N/A | MNIAVKIRRHENQTEYYDLKLSTYKESIEGKFSKEDLRYLIQQIDNEII |
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