NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10006731

Scaffold Ga0206131_10006731


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10006731 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11699
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008882Metagenome / Metatranscriptome326N
F024204Metagenome207N
F032084Metagenome181N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000673116F008882GAGGMSIKRYNFSKPKINRQELELLNWFLAHTDDNPLINPEALELFKANGYSAMNYQDLVNKIKTILKTYKTKREL
Ga0206131_1000673117F024204GAGGMNNYSYLEILEDGIEVCASCGGANINSNRNIDDQDNTKPQDHCFNCDYAEGINLCMPNDLYFYQEAKETLNKINKGEL
Ga0206131_1000673121F004343GAGGMTQHKQMIEEAKRLLNSKRENIPSMSKDFGKDYWLLTYPCGKIVKTYEDKRKKDVIIQESYNGGEL
Ga0206131_1000673125F032084N/ARSKKMRLILSEKDKHIIVTVLGDYATEIDRQATKSKEDLDTYKRIENIISQVAFGFDKEEKEE
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