NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10007600

Scaffold Ga0206131_10007600


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10007600 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10822
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F008577Metagenome / Metatranscriptome331Y
F021302Metagenome / Metatranscriptome219Y
F065127Metagenome / Metatranscriptome128Y
F078296Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000760014F078296N/AMSKITKTFEDKSYSLSTGLTKDLGLFKVNATVWSHAIYNERKKAYDHEISDVEIAYYINDQYCKYQGFKELYEKLYGVDSFKKFEQDITYEFQEAYHDQTTLK
Ga0206131_1000760017F065127N/AMHSKINAIHQRASNKAFAKVEMCQIIIQQDEHNLETKNYGADITLEQATLIAEGNKTELKVWQYIAELIEKSNKI
Ga0206131_1000760025F021302N/AMRTLIQKLKKSRRKRKHVHLVQDRIAELNHEIIISSFKSEYSCNKNITVVKGNIENKAKLLKKYNRRLKLIIY
Ga0206131_100076004F000918N/AMRYLTNNEAWDEVTNAFNESKRRTKICQSLFGQDNLIGLNDEQRDLFWETI
Ga0206131_100076009F008577N/AMNLTWEEIKDIANLLDEIVGNHFHDAMYDIIFDRESDEEVEVTDEDVLAIKEQLKRIL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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