 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020185 Open in IMG/M |
| Scaffold ID | Ga0206131_10008183 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10326 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026885 | Metagenome / Metatranscriptome | 196 | N |
| F028498 | Metagenome / Metatranscriptome | 191 | N |
| F103078 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206131_100081832 | F026885 | N/A | MIEVGKYSIVSLQEAVESAKEMLRIQDTTEFDGFLLRKADEAMRHIGDATTYAKRACTVDIVDGRAKLPMGFIRLLGARMSDSNGNCFDQPYLDLAFLTDCGCENVASTNNGFNNSFEIQEGYIVFHVPSDLETDKMRIAYISRTVDEDGLMLMSERHERGIEAYLCYQFTVSFFENYPVNIRQEYQRTWKNQKQHLKGMSQRERFEENKRQIGALLNAWITSDRNDR |
| Ga0206131_100081833 | F028498 | N/A | MADEGGIFTDESRYDVGTMLTVLNAARAFAITEMYRKNTRVHPNFIQRVYPEYKEAIQQSDCYNLFEIPRTVEINDKMDGLMYVGSIKGDEAFWKIRTRMQLSSRGNQRVHKLAMNKHVHFLYDTTRGYLEIHDPKVKYPLVEGIFEDPTSVPQFSFDHDEYPITNDAMKRIEDLVRRGTIVDSMRMPINKISNSQEDSNIQRDVQTK |
| Ga0206131_100081836 | F103078 | N/A | MEREIAVIKPKGVNHIKQAVTLTATYSLKGRSISLNQYGEVKPGNLTTNRGDIRFAGELATESKIFGESLEDAEDQIDFWMNHPMVEDINGKGKDNSRFTIEVIAATKDKKRAKTVSVNRVVSTIYGMSEAERKDVMYFFKQDPRDMSDDDVTLELVDIEGGLLLREPNTSRFIETFGSLNKSSVARKVEMLVYVNKGIVSGFVTEDADKFYIGDVLIGKDEDDIALFFKDNPQMYDNLVRSLADGGDDTAFNELNEVEEDDITPAEKRAHFTKLYKKYKLKGKFPADLDKAIERIHTYEEENGIELSE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |