 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020185 Open in IMG/M |
| Scaffold ID | Ga0206131_10008279 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10253 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (70.37%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001942 | Metagenome / Metatranscriptome | 613 | Y |
| F002221 | Metagenome | 581 | Y |
| F006845 | Metagenome / Metatranscriptome | 363 | Y |
| F008595 | Metagenome / Metatranscriptome | 331 | Y |
| F012117 | Metagenome / Metatranscriptome | 283 | N |
| F013088 | Metagenome / Metatranscriptome | 274 | Y |
| F036651 | Metagenome / Metatranscriptome | 169 | N |
| F037180 | Metagenome | 168 | Y |
| F077490 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206131_1000827911 | F013088 | N/A | MDDKTKKALWIPEELHKEIKVFAIVNNMNIESATQLLLKLGMCSYKTEK |
| Ga0206131_1000827914 | F036651 | GGTGG | MVNLLITKREYVMDIHLNEVGRVKPLILTKRQIRGYYKDYLTGENKVQTANREYTVRDSLTEIAYLMGEQR |
| Ga0206131_1000827916 | F077490 | GGAG | MSNEIKVTGNINSWGKNSIDGAEVFFNKHIKDCSCGGSYSYSAMLEMEQIKEGDLVDTCATIECGNCYSMLDVCDFNITLQIPNNLTEQFAKEKIWCKSKDYVEMSQGVTSMDWEAQMGNKSFEQLAEQELKAQGVI |
| Ga0206131_1000827919 | F001942 | N/A | MPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGNAKYTVQVKSRRATKEKKFVFAAENSRSMSGTYKNYHCDILAFVFFYNEHKRILFKSNTSSQNYFTFDKKVITDTMEIDSLQESLDTLSAVPVLNPII |
| Ga0206131_1000827922 | F037180 | AGGA | MTELAKVDDKSTLNISLSYLLQIISAIALAVWGYANISEKIDFNDREIQNLRANQNKYIFPDIRVLEEQVIELEKEVLILQTELDLHKKEVR |
| Ga0206131_1000827925 | F008595 | AGGAG | MSNEENKMENQEPVIITFNDVEYRAADLNEEQMALAAKLNVAGKKLARLQEHYDDYVITNEYKNLVIESFDRAINAEDVAEVVEEE |
| Ga0206131_100082793 | F002221 | AGG | MKIYLDETLKDKLKDLRTYENETYVKWGNRKRIFKMIGVPFEIKFCRAEQMLKDSMINDSKQKQLSMVEMMLRAYEQLNIKCEESGYIQIQPNAKCFNFDNKTALVCDTDSDKPVLEKIHKDEKDIMIFSIEELFRCIPKDFIRAKELLSKLDKSVNFKKVDYV |
| Ga0206131_100082796 | F012117 | GGAG | MVDILGGMSSSNDSQQVYLAFKTSHQQFFANGETPVDFQYLQLDPSTFKSGWGRYTKADGFEYTWDEKFGVLAPKPADDYKRAFSAWVMPQGAQHAYLWQRFTYAESSAFNSILGGFWNQMDASSDSLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRATEFVIPQWYIDQEAPVEDTFKSPNDGLAEKVQEMVDKNELSDDDIPF |
| Ga0206131_100082797 | F006845 | GAG | MKSYKKQMDLNSYLLQEDFEEFCRRAYERITIACDVFGIVNDEDYYSFKERCYTQLEADYLNSIDKTIH |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |