NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10016169

Scaffold Ga0206131_10016169


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10016169 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6444
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025412Metagenome202Y
F027524Metagenome194N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1001616910F027524N/AVNEEFIKEKRQVIETACKNICKHSDIWQDLAQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKIRNNNK
Ga0206131_1001616912F025412N/AMDYRQLKWGALKSYATKLGINTKGMTKEVLLEWLDAMPDVAHGIEELTPFTGIKQEHPLFEEVKDYLPYLKAYKKLNAISRDPNINKAIAALFLKYIEEDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEHGGDKI
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