NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206131_10023653

Scaffold Ga0206131_10023653


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10023653 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4915
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003647Metagenome / Metatranscriptome475Y
F005817Metagenome / Metatranscriptome389N
F023593Metagenome / Metatranscriptome209N
F067108Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1002365312F067108N/AMSKIIKVDENVDFSVFTKFTKDLGLFQVTASVWSMVSQDCRCSHDISEIELDFSVNNKPCKYLGFKELYEKLYGKDTFNQFYDDLKSEFEEEYFKQTTYKTK
Ga0206131_1002365314F023593N/AMSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDIDYYKQNTIISG
Ga0206131_100236538F003647N/AMVMCEWTLADVKNRASNKAFAKVTILTLDVETYKEDLRTGNIGGVTYEEFEQVVKGYETELQIWNYITELIEKQ
Ga0206131_100236539F005817N/AMRSNLLSRLKPEFKKGLEDNKVRYPSMTNDIEFLLTQIFYYDDLTVRQVLNIFVFSDMEYLDRKSFDWRYGEDVFEIENNVA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.