Scaffold Ga0206131_10045750

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206131_10045750

Scaffold Ga0206131_10045750

Overview

Basic Information
Taxon OID	3300020185 Open in IMG/M
Scaffold ID	Ga0206131_10045750 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3013
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F063638	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206131_100457503	F001668	N/A	MSTVYLPVEETIPGMTSGERATAINAEVWALLRPAALQLPQDTKYKYPQITHPETGQEAIVGDTTENIYINPLVDLTELLELLPEVPQAEKDGLVMFIDANKGSSVPFGQLIPSTSTQLTEVEAEALGWLPDPIEP
Ga0206131_100457506	F063638	AGG	MLDTLDTLTAVLDTVVTVVTDPIILDPMEPWYVTHYVELIFIVLAAAKAVLNLVPSEKPLVIFGYLDTLIGLIFKD

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