NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10094994

Scaffold Ga0206131_10094994


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10094994 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1737
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F041486Metagenome / Metatranscriptome160Y
F096209Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_100949942F000379AGGAGMYNKIDYDNKHGMMVGYVDNGTVTAVVPGWDIKPEALSKLLLDKYPTREDAMTVVDSPLLVPVFKKDDYCGVEGFGDVIESNLSWNKEVMKKEVGHLFCHMTGIWKYSDNGIDWWPAEEAFVDTGGTSFTNIREALEMEKA
Ga0206131_100949943F096209GGAGMTTAIQTKSVQEIFEEMTESYSLGEYLDGYTSYGEDALMTPDKFADRFQHICFGFGHREAEIIPQKLEIKEWCQEHLDKLESRFR
Ga0206131_100949945F041486GGAMIISTVFGFFLTIVGMNETAVAGYKIFTTANNIQEKAEKKEWKASLHEEAHQILKDAIKEAGK
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