NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10127599

Scaffold Ga0206131_10127599


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10127599 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1384
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003769Metagenome / Metatranscriptome469Y
F050952Metagenome / Metatranscriptome144Y
F052534Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_101275991F050952GAGGMQNTTTKTNNVFLNACNACIVVTVNNTVVATDVQTADALVQVFLTHNIN
Ga0206131_101275993F003769N/AMQQLKTITVKTSNKVESVHMQTLYKVIENCYNSLQIMESDCTSASYFVNSANIFAQLQMLYCENETSNYVSLQSVMEIFANNITFYDEKYSLFTSVVENTAMQNVNLENYTYLSN
Ga0206131_101275994F052534GGAGMLKQKALTRNLTATLCTTSNTLFIHNNKTVKKAAFVYTQNAQKVVRNLNAQQQAAFNNLAATYMQSAKQFIQNKLAQSIILKS
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