Scaffold Ga0206130_10013455

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206130_10013455

Scaffold Ga0206130_10013455

Overview

Basic Information
Taxon OID	3300020187 Open in IMG/M
Scaffold ID	Ga0206130_10013455 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7931
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066807	Metagenome / Metatranscriptome	126	N
F087014	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206130_100134553	F087014	N/A	MATIRQPTTRSVETAIVAHLKKYAALKGCAVIAKGDASEAPDKLPCIVVHCSSAPRHSDIIGFYARDAEVNVTLYADSEQTTESQCEKYAGDMETCLDWVDGLKTQFNAPDSGQDTRKIRGVYLHEIIAFGTEYDTEGTMWQRSATMTMVVQEIDE
Ga0206130_100134557	F066807	N/A	MANYALLLGTKAGKTTLIEKGQPVEIRRQFKDMKASDGFDSIEVVDKHLGQIRQRKFVKPATKKAAKKASK

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