NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206130_10042643

Scaffold Ga0206130_10042643


Overview

Basic Information
Taxon OID3300020187 Open in IMG/M
Scaffold IDGa0206130_10042643 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3363
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008883Metagenome / Metatranscriptome326Y
F038216Metagenome / Metatranscriptome166Y
F056585Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0206130_1004264311F038216GAGMTKQINYGTHETIENSHRTLSTAVEMYAIYYSDYGDVLKEISQYQDSDEWANAPYIDELPRYIELQKKKNAIIRELHAIGKELRSVGLDVDLGDHAKVDEYYDSLKVAA
Ga0206130_100426434F056585GGAGMTRETWEMWADEYQEYYEDETPVYPDDMEEFKKEEQKVIDEVIRAIQGLSA
Ga0206130_100426436F008883GAGGMTFGNYTIWYNHESHVWDIYDGRKGFMYPEYTVNNYSRLLCTLRDKLSRFDTDRNRGLFYRFMRFIRRFKRV
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