NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206130_10100208

Scaffold Ga0206130_10100208


Overview

Basic Information
Taxon OID3300020187 Open in IMG/M
Scaffold IDGa0206130_10100208 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1704
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028771Metagenome / Metatranscriptome190N
F062669Metagenome / Metatranscriptome130N
F104955Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0206130_101002081F028771N/APNKKFYDWDIKANYKGNEVTYEVKYDSKGYYYADRYSRPVNLYIEFQNTKKGEDSGIIASKATYYVYILKSLEGVETAYVFKRLDLLNHLRNNDVKVKGNSFGGDNNAKGWTPPLNSLEHLIVKKIKFI
Ga0206130_101002083F104955GGAGMPFDKNVSDHFYELGLDLLFIGYTRADLKLWIKKAEEEESYEECDGLLRALNFKGSMEEMGYNYGEEEEDFI
Ga0206130_101002084F062669GGAMAKKKKISFKYYNTNNEAQSHCFKKGYVIYPDPVNPKYFKGEWRVSIELGHRKHTYPEVLSLTEAYIKIWKEYEKIQNRDNNGKT
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