NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206130_10217079

Scaffold Ga0206130_10217079


Overview

Basic Information
Taxon OID3300020187 Open in IMG/M
Scaffold IDGa0206130_10217079 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)901
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037937Metagenome / Metatranscriptome167N
F063074Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0206130_102170791F037937N/AHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGDEIVYAKNFG
Ga0206130_102170792F063074N/AMPCSVTLSDISYSCDDLGIGGIVELHIASRANALAAITTKDDDARSISAVSGAASDVVNIDFHLKDGFSVFSEVKTVDASGGFATVPTISVELPKMDATKNGILDQMSNGPKEMVAFVKTAAGTFHVCGLDHGIYVSTVDANSGTGRSEKNRFQLTLTGEENGLSYSIAETQFNDITA
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