NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194118_10031213

Scaffold Ga0194118_10031213


Overview

Basic Information
Taxon OID3300020190 Open in IMG/M
Scaffold IDGa0194118_10031213 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3775
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.0012Long. (o)29.8102Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072902Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0194118_1003121310F072902AGGAMKRKYHKRTENQHAGTLELLYKQRIEELXKENIIRAQRINMLEP
Ga0194118_100312133F072902AGGAMKXKYPKITENQNAGTLELLYNQRTEEIXKDNILREQRTKMLEP
Ga0194118_100312135F072902GGAMNGKYPKRTENQHAGAVELLYKQRIEELXKDNILR
Ga0194118_100312136F072902AGGAMKGTYPKMAENQHAGTLELLYEQRIEDIXKEHILR
Ga0194118_100312138F072902AGGAMKGKYPKRTENQHAGTLELLYKQRIEELXKDTVLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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