Scaffold Ga0163150_10000942

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0163150_10000942

Scaffold Ga0163150_10000942

Overview

Basic Information
Taxon OID	3300020195 Open in IMG/M
Scaffold ID	Ga0163150_10000942 Open in IMG/M
Source Dataset Name	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	51416
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Lake Vanda, McMurdo Dry Valleys
Coordinates	Lat. (^o)	-77.5281	Long. (^o)	161.59	Alt. (m)		Depth (m)	19
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030769	Metagenome / Metatranscriptome	184	Y
F039845	Metagenome / Metatranscriptome	163	N
F040669	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163150_1000094218	F030769	AGGAG	MPYGAFADTQSRYRDLEELVDYREYEGAWMLGFEENWLKPRLKALGYSHVRFFGGTTFDYDGSFRERVCELAMPGSARAEFFVYG
Ga0163150_1000094220	F039845	GGA	MIVCVLSLGSYWREPNDGRPVVWNSSGVLDQRGLRPRAKVFGHVRLNSRLYQEALGTSGLSGSCWQASRLGEHLGIRTLALQRRARRNSHPDWYLVSVTEQLVGTLDARSWDPKGSLLVSFSEWKTKQEVLFLIGRHGWLRGELGSAVLTPGGPGGDWLVKGW
Ga0163150_1000094227	F040669	GAGG	MTATTEANWAPLEARLRCDVKVIREFMWMFGDANTGVEYYKHSITRRYLLLHRDGRCFQQSLNGLVEVDFATDLVRVREHPEEGR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.