NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194128_10081264

Scaffold Ga0194128_10081264


Overview

Basic Information
Taxon OID3300020197 Open in IMG/M
Scaffold IDGa0194128_10081264 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2108
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)65
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002359Metagenome / Metatranscriptome567Y
F050200Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0194128_100812641F002359AGGAGMNTTYEVADMMIGVRNMIEASDLRKGDQVLLLADTRSDKTTLEALTAGIRFYGAEPMTLVTEPIARYGKVPKAVLDAMHASDVAIWVWPVFITFTPDHRALGRKREESGTQLHETRMKPYHIYFEGNAGLLARDYAKFPNRVLWKLAEKVREVVANGKVVRIEDDLGSKLTATYDGKKLYGMQFRAGDPPGRCHFPWGRCG
Ga0194128_100812643F050200GGAGGMGKKIREFMTHREPSEHIWMERDEAAVIGTARMGQRMVPKIRAFDLLRSTPLTGNRARATVFEGETLRVTTEYIAGRETQLTRACDYDTIYLQFCG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.