NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179592_10000124

Scaffold Ga0179592_10000124


Overview

Basic Information
Taxon OID3300020199 Open in IMG/M
Scaffold IDGa0179592_10000124 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31797
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (71.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003528Metagenome / Metatranscriptome481Y
F004353Metagenome / Metatranscriptome442Y
F010390Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0179592_100001244F010390AGGMRHSFAAVLCSISLFASTTLAQSPDVAPVRVAAGTVLKFHVQTRLHPTAADALDALPKGTVLEVRMLDSIDSAVDHDGAEFHGTLAAPLVLGGEVIIRSDSEVRGLLVLLRSKSHPEGFRYELLVTGLTDRGKSYDLTASLNPSFVDPAAQPAPESKSATK
Ga0179592_100001245F004353AGGAGGMRNVGRVFFTALAGLTLVVAVWAFSPPTAHDAALLSLSNNQAAAPEQSVSGKIASVEKNSFTLTVGQSQTSTAGQNVLQDSASPKTMVFQLDKNTAIEGSLKVGASADVTYRQEKGTNIAISVRVTP
Ga0179592_100001248F003528AGGAGGMAGKVLLAQDAAYDILILDADGQHLALESFKDLDTARRRLPALAAQYPGTKVAVWNRNTRTILAETDGY
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