NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0179592_10001459

Scaffold Ga0179592_10001459


Overview

Basic Information
Taxon OID3300020199 Open in IMG/M
Scaffold IDGa0179592_10001459 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9573
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000986Metagenome / Metatranscriptome813Y
F005953Metagenome / Metatranscriptome385Y
F023698Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0179592_100014591F023698N/ASQVEVKVPMKVIDALFSAGKDELDLVAALHALSAQGDTELVSVKDHENTVRVWLDSKNVT
Ga0179592_1000145912F005953N/AMLGLWAVLTLTGALYSAWLGYGGRAFAATLTAFAFFFLVMLLFAARGVEDSFASRFGAGGGYLLGAAVFLVYLIYGLGTNTFAFARAAAV
Ga0179592_100014592F000986AGGAGGMMLLAKAALGLGSTLVLAGAYTFHEGVIRVDVDEYRAGGSHVHMWLPAAAVPMAMHFVPGKQIRHASEQASEALPMLHAIVKELKKYPDADFVEVVDPDQHVRMRTHGGKLQIDVDAPHEKVHVLCPLSAIEDVTSHLEEYAPGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.