NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179592_10005638

Scaffold Ga0179592_10005638


Overview

Basic Information
Taxon OID3300020199 Open in IMG/M
Scaffold IDGa0179592_10005638 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5330
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014602Metagenome261Y
F046930Metagenome150Y
F051726Metagenome143Y
F090128Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0179592_100056383F090128AGGAGGMAESKIEPLCPVRFQTSDGQLYDVDYRDIEKVFDRDPEGRTVPGDDPSDLLLTAEDCVWLWMWGIGH
Ga0179592_100056387F046930N/AMEGPVPRLLSISIISALAVFLAGAWLLHDGVSARDPLHLQIEIIAGATLLSVGVVSSVLLLRDWIKWKRELAKYRES
Ga0179592_100056388F051726GGAGMSMSQRQIYRCQNRACGCEIIVTKTSVETRANPRCFCGSNMKKPYSPPVLRMLNPDDELVSRLEQIEI
Ga0179592_100056389F014602GGAGGMIDSWMKQSPSGKTVTFKIEGDRKSGFVYSAKMDGRDIKEIKGFREELTREGVEVMFAKYVAGK
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